API Reference¶
dmipy
core
- Module:
core.acquisition_scheme
- Module:
core.constants
- Module:
core.fitted_modeling_framework
- Module:
core.gradient_conversions
- Module:
core.modeling_framework
DmipyAcquisitionScheme
GradientTable
RotationalHarmonicsAcquisitionScheme
SphericalMeanAcquisitionScheme
- acquisition_scheme_from_bvalues
- acquisition_scheme_from_gradient_strengths
- acquisition_scheme_from_qvalues
- acquisition_scheme_from_schemefile
- b_from_g
- b_from_q
- calculate_shell_bvalues_and_indices
- check_acquisition_scheme
- fcluster
- g_from_b
- g_from_q
- get_sh_order_from_bval
- gradient_table
- gtab_dipy2mipy
- gtab_mipy2dipy
- linkage
- q_from_b
- q_from_g
- real_sym_rh_basis
- real_sym_sh_mrtrix
- unify_length_reference_delta_Delta
- warn
FittedMultiCompartmentModel
FittedMultiCompartmentSphericalHarmonicsModel
FittedMultiCompartmentSphericalMeanModel
- T1_tortuosity
- cart2mu
- estimate_spherical_mean_multi_shell
- fractional_parameter
- get_sphere
- real_sym_sh_mrtrix
- sh_to_sf_matrix
- unitsphere2cart_Nd
- b_from_g
- b_from_q
- g_from_b
- g_from_q
- q_from_b
- q_from_g
Brute2FineOptimizer
FittedMultiCompartmentModel
FittedMultiCompartmentSphericalHarmonicsModel
FittedMultiCompartmentSphericalMeanModel
GeneralPurposeCSDOptimizer
GlobalBruteOptimizer
MixOptimizer
ModelProperties
MultiCompartmentModel
MultiCompartmentModelProperties
MultiCompartmentSphericalHarmonicsModel
MultiCompartmentSphericalMeanModel
OrderedDict
ReturnFixedValue
- T1_tortuosity
- estimate_spherical_mean_multi_shell
- fractional_parameter
- homogenize_x0_to_data
- optional_package
- parameter_equality
- sh_convolution
- time
- Module:
data
- Module:
data.saved_acquisition_schemes
- Module:
data.saved_data
- acquisition_scheme_from_bvalues
- acquisition_scheme_from_gradient_strengths
- acquisition_scheme_from_schemefile
- de_santis_generated_acquisition_scheme
- duval_cat_spinal_cord_2d_acquisition_scheme
- duval_cat_spinal_cord_3d_acquisition_scheme
- isbi2015_white_matter_challenge_scheme
- join
- panagiotaki_verdict_acquisition_scheme
- urlopen
- wu_minn_hcp_acquisition_scheme
- de_santis_camino_data
- duval_cat_spinal_cord_2d
- duval_cat_spinal_cord_3d
- isbi2015_white_matter_challenge
- join
- panagiotaki_verdict
- pearsonr
- synthetic_camino_data_dispersed
- synthetic_camino_data_parallel
- urlopen
- visualize_correlation_camino_and_estimated_fractions
- wu_minn_hcp_coronal_slice
- Module:
distributions
- Module:
distributions.distribute_models
- Module:
distributions.distributions
DD1GammaDistributed
DistributedModel
OrderedDict
ReturnConstrainedBeta
ReturnFixedValue
SD1WatsonDistributed
SD2BinghamDistributed
chain
- T1_tortuosity
- parameter_equality
- sh_convolution
DD1Gamma
HemiSphere
ModelProperties
SD1Watson
SD2Bingham
- get_sh_order_from_odi
- get_sphere
- join
- kappa2odi
- odi2kappa
- optional_package
- real_sym_sh_mrtrix
- Module:
hcp_interface
optimizers
- Module:
optimizers.brute2fine
- Module:
optimizers.mix
Brute2FineOptimizer
GlobalBruteOptimizer
- brute
- cart2mu
- find_minimum_argument
- minimize
- nested_to_normalized_fractions
- normalized_to_nested_fractions_array
- optional_package
MixOptimizer
- cobyla_positivity_constraint
- cobyla_unity_constraint
- differential_evolution
- fmin_cobyla
- minimize
- nested_to_normalized_fractions
- Module:
optimizers_fod
signal_models
- Module:
signal_models.capped_cylinder_models
- Module:
signal_models.cylinder_models
- Module:
signal_models.gaussian_models
- Module:
signal_models.plane_models
- Module:
signal_models.sphere_models
CC2CappedCylinderStejskalTannerApproximation
CC3CappedCylinderCallaghanApproximation
ModelProperties
C1Stick
C2CylinderStejskalTannerApproximation
C3CylinderCallaghanApproximation
C4CylinderGaussianPhaseApproximation
ModelProperties
- optional_package
G1Ball
G2Zeppelin
G3TemporalZeppelin
ModelProperties
- optional_package
ModelProperties
P2PlaneStejskalTannerApproximation
P3PlaneCallaghanApproximation
ModelProperties
S1Dot
S2SphereStejskalTannerApproximation
S4SphereGaussianPhaseApproximation
- Module:
utils
- Module:
utils.spherical_convolution
- Module:
utils.spherical_mean
- Module:
utils.utils
- optional_package
- real_sph_harm
- real_sym_rh_basis
- sh_convolution
- estimate_spherical_mean_multi_shell
- estimate_spherical_mean_shell
- real_sym_sh_mrtrix
- R2mu_psi
- T1_tortuosity
- cart2mu
- cart2sphere
- define_shell_indices
- fractional_parameter
- get_sphere
- optional_package
- parameter_equality
- perpendicular_vector
- rotation_matrix_001_to_xyz
- rotation_matrix_100_to_theta_phi
- rotation_matrix_100_to_theta_phi_psi
- rotation_matrix_100_to_xyz
- rotation_matrix_around_100
- sphere2cart
- unitsphere2cart_1d
- unitsphere2cart_Nd
- Module: